Genohm has an extensive history in genomic data visualisation, and our experience is crystallized in several in-house frameworks.
The SeqPad framework is a Java/Swing based framework for sequence annotation.

The seqpad framework is ideally suited for applications that want to visualise, manipulate and annote sequence data.
The ViewS framework is a Java/Flex based client/server framework for genome visualisation.

It is ideally suited for visualising genome wide features and next gen sequencing datasets in a client/server setting. ViewS has been used to develop state of the art client/server visualisation engines, such as the Mutareporter framework (developed with our partner Mutabase) or the H2G2 framework (developed with our partner Biobix).
Contact us for developing your custom data visualisation engine.